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This site documents the modernized Enhancer-Promoter-Interaction framework, while preserving the original DeepChrInteract writing as legacy reference. The preserved legacy pages are also available through Legacy DeepChrInteract Documentation.
Contents
- Biological Background
- Quick Start
- DeepChrInteract Model Overview
- CNN Models
- ResNet Models
- BiLSTM Model
- mLSTM Model
- Transformer Model
- Linear Transformer Model
- iTransformer Model
- Mamba Model
- RWKV Model
- Hybrid Models
- DNA Foundation Models
- MAE Pretraining Model
- Fusion Strategies
- Data Organization
- Training and Evaluation
- Experiments
- Deployment
- Legacy Notes
